rAn object of class Seurat 41753 features across 5594 samples within 2 assays Active assay: SCT (14486 features, 3000 variable features) 1 other assay present: RNA 3 dimensional reductions calculated: pca, umap, tsne
The Seurat object was generated with Seurat 3.1.4.
Downsampled to 5000 cells.
## R version 3.6.3 (2020-02-29)
## Platform: x86_64-apple-darwin18.7.0 (64-bit)
## Running under: macOS Mojave 10.14.6
##
## Matrix products: default
## BLAS/LAPACK: /usr/local/Cellar/openblas/0.3.9/lib/libopenblasp-r0.3.9.dylib
##
## locale:
## [1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] Seurat_3.1.5 plotly_4.9.2.1 rmarkdown_2.1 knitr_1.28 dplyr_0.8.5
## [6] ggplot2_3.3.0
##
## loaded via a namespace (and not attached):
## [1] nlme_3.1-147 tsne_0.1-3 bitops_1.0-6
## [4] RcppAnnoy_0.0.16 RColorBrewer_1.1-2 httr_1.4.1
## [7] sctransform_0.2.1 tools_3.6.3 R6_2.4.1
## [10] irlba_2.3.3 KernSmooth_2.23-16 uwot_0.1.8
## [13] lazyeval_0.2.2 colorspace_1.4-1 npsurv_0.4-0
## [16] withr_2.2.0 tidyselect_1.0.0 gridExtra_2.3
## [19] compiler_3.6.3 labeling_0.3 caTools_1.18.0
## [22] scales_1.1.0 lmtest_0.9-37 ggridges_0.5.2
## [25] pbapply_1.4-2 stringr_1.4.0 digest_0.6.25
## [28] pkgconfig_2.0.3 htmltools_0.4.0 htmlwidgets_1.5.1
## [31] rlang_0.4.5 farver_2.0.3 zoo_1.8-7
## [34] jsonlite_1.6.1 crosstalk_1.1.0.1 ica_1.0-2
## [37] gtools_3.8.2 magrittr_1.5 patchwork_1.0.0
## [40] Matrix_1.2-18 Rcpp_1.0.4.6 munsell_0.5.0
## [43] ape_5.3 reticulate_1.15 lifecycle_0.2.0
## [46] stringi_1.4.6 yaml_2.2.1 MASS_7.3-51.5
## [49] gplots_3.0.3 Rtsne_0.15 plyr_1.8.6
## [52] grid_3.6.3 parallel_3.6.3 gdata_2.18.0
## [55] listenv_0.8.0 ggrepel_0.8.2 crayon_1.3.4
## [58] lattice_0.20-41 cowplot_1.0.0 splines_3.6.3
## [61] pillar_1.4.3 igraph_1.2.5 future.apply_1.5.0
## [64] reshape2_1.4.4 codetools_0.2-16 leiden_0.3.3
## [67] glue_1.4.0 evaluate_0.14 lsei_1.2-0
## [70] data.table_1.12.8 vctrs_0.2.4 png_0.1-7
## [73] gtable_0.3.0 RANN_2.6.1 purrr_0.3.4
## [76] tidyr_1.0.2 future_1.17.0 assertthat_0.2.1
## [79] xfun_0.13 rsvd_1.0.3 survival_3.1-12
## [82] viridisLite_0.3.0 tibble_3.0.1 cluster_2.1.0
## [85] globals_0.12.5 fitdistrplus_1.0-14 ellipsis_0.3.0
## [88] ROCR_1.0-7